pdb.pep: Check Whether an Oligopeptide is Found in the PDB
In jcaledo/ptm_0.1.1: Analyses of Protein Post-Translational Modifications
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
View source: R/pdb_ancillary.R
Description
Checks whether a given oligopeptide is resolved in the PDB.
Usage
1
pdb.pep(pep, pdb)
Arguments
pep
character string corresponding to the sequence of the oligopeptide.
pdb
the 4-letter PDB identifier.
Details
The oligopeptide sequence must be given in one letter amino acid code.
Value
The functions returns TRUE if peptide is found in the PDB sequence (and gives the starting position), and FALSE otherwise.
Author(s)
Juan Carlos Aledo
See Also
pdb.res()
Examples
1
pdb.pep(pep = 'IVKGRASLTQEQ' , pdb = '2aw5')
jcaledo/ptm_0.1.1 documentation built on April 4, 2020, 3:48 a.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
View source: R/pdb_ancillary.R
Description
Checks whether a given oligopeptide is resolved in the PDB.
Usage
1 | pdb.pep(pep, pdb)
|
Arguments
pep |
character string corresponding to the sequence of the oligopeptide. |
pdb |
the 4-letter PDB identifier. |
Details
The oligopeptide sequence must be given in one letter amino acid code.
Value
The functions returns TRUE if peptide is found in the PDB sequence (and gives the starting position), and FALSE otherwise.
Author(s)
Juan Carlos Aledo
See Also
pdb.res()
Examples
1 | pdb.pep(pep = 'IVKGRASLTQEQ' , pdb = '2aw5')
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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