pdb.res: Check Whether a Given Residue is Found in the PDB

In jcaledo/ptm_0.1.1: Analyses of Protein Post-Translational Modifications

Description

Checks whether or not a given residue is resolved in the PDB structure.

Usage

pdb.res(at, up, pdb, chain)

Arguments

at	the position in the primary structure of the residue (according to the UniProt sequence).
up	the UniProt ID.
pdb	the 4-letter PDB identifier.
chain	letter identifying the chain.

Details

This function checks if a given residue in the Uniprot sequence is found in the PDB.

Value

The functions returns TRUE if the residue is found in the PDB sequence (and gives the position in that sequence). If the residue of interest is not found in the PDB the function returns FALSE.

Author(s)

Juan Carlos Aledo

See Also

pdb.pep()

Examples

pdb.res(at = 361, up = 'P48163', pdb = '2aw5', chain = 'A')

jcaledo/ptm_0.1.1 documentation built on April 4, 2020, 3:48 a.m.