dist2closest: Search and Compute the Distance to the Closest Aa

In jcaledo/ptm_0.1.1: Analyses of Protein Post-Translational Modifications

Description

Computes the distance to the closest amino acid of the indicated type

Usage

dist2closest(pdb, chain, res, aa = "M", backbone = FALSE)

Arguments

pdb	is either a PDB id, or the path to a pdb file.
chain	chain ID.
res	position of the residue of interest.
aa	amino acid of interest.
backbone	logical, when TRUE it means that we include those atoms belonging to the main chain (CA, N, O and C) beside all the side chain atoms.

Details

The identity of the closest Aa is given as an attribute.

Value

Numerical value indicating the distance in ångströms (Å).

See Also

res.dist(), pairwise.dist(), ball()

Examples

## Not run: dist2closest(pdb = '1q8k', chain = 'A', res = 222, aa = 'S')

jcaledo/ptm_0.1.1 documentation built on April 4, 2020, 3:48 a.m.