msa: Multiple Sequence Alignment

In jcaledo/ptm_0.1.1: Analyses of Protein Post-Translational Modifications

Description

Aligns multiple protein sequences

Usage

msa(sequences, ids = names(sequences), sfile = FALSE)

Arguments

sequences	vector containing the sequences.
ids	vector containing the sequences' ids.
sfile	path to the file where the fasta alignmet should be saved, if any.

Value

Returns a list of four elements. The first one ($seq) provides the sequences analyzed, the second element ($ids) retuns the identifiers, ther third element ($aln) privides the alignment in fasta format and the fourth element ($ali) gives the alignment in matricial format.

jcaledo/ptm_0.1.1 documentation built on April 4, 2020, 3:48 a.m.