dpx: Atom Depth Analysis
In jcaledo/ptm_0.1.1: Analyses of Protein Post-Translational Modifications
Description
Usage
Arguments
Details
Value
Author(s)
References
See Also
Description
Computes the depth from the surface for each protein's atom.
Usage
1
dpx(pdb)
Arguments
pdb
is either a PDB id, or the path to a pdb file.
Details
This function computes the depth, defined as the distance in angstroms between the target atom and the closest atom on the protein surface.
Value
A dataframe with the computed depths.
Author(s)
Juan Carlos Aledo
References
Pintar et al. 2003. Bioinformatics 19:313-314 (PMID: 12538266)
See Also
compute.dssp(), atom.dpx(), res.dpx(), acc.dssp(), str.partition()
jcaledo/ptm_0.1.1 documentation built on April 4, 2020, 3:48 a.m.
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Description Usage Arguments Details Value Author(s) References See Also
Description
Computes the depth from the surface for each protein's atom.
Usage
1 | dpx(pdb)
|
Arguments
pdb |
is either a PDB id, or the path to a pdb file. |
Details
This function computes the depth, defined as the distance in angstroms between the target atom and the closest atom on the protein surface.
Value
A dataframe with the computed depths.
Author(s)
Juan Carlos Aledo
References
Pintar et al. 2003. Bioinformatics 19:313-314 (PMID: 12538266)
See Also
compute.dssp(), atom.dpx(), res.dpx(), acc.dssp(), str.partition()
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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