combine_directional_pvalues | Directionally combine p-values |
cor_by_grp | Correlation test in each group |
correct_null_distribution | Correct null distribution |
edger_contrasts | Apply edgeR's glmQLFit or glmFit, glmQLFTest, glmLRT, or... |
edger_ftest_contrasts | #' Apply edgeR's glmQLFit or glmFit, glmQLFTest, glmLRT, or... |
filter_valids | Filter features |
hclust_and_heat | Hierarchical Clustering & visulization by heatmap |
hclust_in_grp | Hierarchical Clustering in each group |
impute_normal | Impute missing values by random numbers drawn from a normal... |
limma_find_markers | Find markers by limma's pairwise moderated t-tests |
limma_ftest_contrasts | Apply limma's lmFit, contrasts.fit, & eBayes to one or more... |
limma_ftest_pairwise | Perform limma's moderated F-test for all pairwise comparions,... |
make_smpdb_glist | Make a feature list for SMPDB pathways. |
multi_pval2z | Convert the table of p-values to Z-scores |
pval2z | Convert p-values to Z-scores |
rankprod | Rank products of a matrix where larger statistics have... |
ranksum | Rank sum of a matrix where larger statistics have stronger... |
sample_bsgenome_regions | Rand seq |
select_top | Select equal numbers of top features from the topTable |
signed_rankprod | Signed rank products of a two column matrix where larger... |
signed_ranksum | Signed rank sum of a matrix where larger statistics have... |
venn_fisher_test | Fisher exact test for 2-way Venn |
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