Man pages for jdreyf/jdcbioinfo
Joslin Diabetes Center bioinformatics utilities
| combine_directional_pvalues | Directionally combine p-values |
| cor_by_grp | Correlation test in each group |
| correct_null_distribution | Correct null distribution |
| edger_contrasts | Apply edgeR's glmQLFit or glmFit, glmQLFTest, glmLRT, or... |
| edger_ftest_contrasts | #' Apply edgeR's glmQLFit or glmFit, glmQLFTest, glmLRT, or... |
| filter_valids | Filter features |
| hclust_and_heat | Hierarchical Clustering & visulization by heatmap |
| hclust_in_grp | Hierarchical Clustering in each group |
| impute_normal | Impute missing values by random numbers drawn from a normal... |
| limma_find_markers | Find markers by limma's pairwise moderated t-tests |
| limma_ftest_contrasts | Apply limma's lmFit, contrasts.fit, & eBayes to one or more... |
| limma_ftest_pairwise | Perform limma's moderated F-test for all pairwise comparions,... |
| make_smpdb_glist | Make a feature list for SMPDB pathways. |
| multi_pval2z | Convert the table of p-values to Z-scores |
| pval2z | Convert p-values to Z-scores |
| rankprod | Rank products of a matrix where larger statistics have... |
| ranksum | Rank sum of a matrix where larger statistics have stronger... |
| sample_bsgenome_regions | Rand seq |
| select_top | Select equal numbers of top features from the topTable |
| signed_rankprod | Signed rank products of a two column matrix where larger... |
| signed_ranksum | Signed rank sum of a matrix where larger statistics have... |
| venn_fisher_test | Fisher exact test for 2-way Venn |
