Man pages for jdreyf/jdcbioinfo
Joslin Diabetes Center bioinformatics utilities

combine_directional_pvaluesDirectionally combine p-values
cor_by_grpCorrelation test in each group
correct_null_distributionCorrect null distribution
edger_contrastsApply edgeR's glmQLFit or glmFit, glmQLFTest, glmLRT, or...
edger_ftest_contrasts#' Apply edgeR's glmQLFit or glmFit, glmQLFTest, glmLRT, or...
filter_validsFilter features
hclust_and_heatHierarchical Clustering & visulization by heatmap
hclust_in_grpHierarchical Clustering in each group
impute_normalImpute missing values by random numbers drawn from a normal...
limma_find_markersFind markers by limma's pairwise moderated t-tests
limma_ftest_contrastsApply limma's lmFit, contrasts.fit, & eBayes to one or more...
limma_ftest_pairwisePerform limma's moderated F-test for all pairwise comparions,...
make_smpdb_glistMake a feature list for SMPDB pathways.
multi_pval2zConvert the table of p-values to Z-scores
pval2zConvert p-values to Z-scores
rankprodRank products of a matrix where larger statistics have...
ranksumRank sum of a matrix where larger statistics have stronger...
sample_bsgenome_regionsRand seq
select_topSelect equal numbers of top features from the topTable
signed_rankprodSigned rank products of a two column matrix where larger...
signed_ranksumSigned rank sum of a matrix where larger statistics have...
venn_fisher_testFisher exact test for 2-way Venn
jdreyf/jdcbioinfo documentation built on Dec. 3, 2019, 8:52 p.m.