correct_null_distribution: Correct null distribution

In jdreyf/jdcbioinfo: Joslin Diabetes Center bioinformatics utilities

Correct null distribution

Description

Correct null distribution using fdrtool.

Usage

correct_null_distribution(
  tab,
  prefix.v = NULL,
  p.suffix = "p",
  fdr.suffix = "FDR",
  direction.suffix = "logFC",
  verbose = TRUE
)

Arguments

tab	Table of output from ezlimma.
prefix.v	A vector of prefixes that prefix .p, .FDR, or .logFC in colnames(tab). These will be the columns that are used in the Venn diagram. If NULL these are inferred from colnames(tab) that end with .p.
p.suffix	The suffix of p-value columns.
fdr.suffix	The suffix of FDR columns.
direction.suffix	The suffix of direction columns such as log fold-change, regression slope, correlation coefficient, or the "Up/Down" values
verbose	Print out status messages.

Value

Matrix or data.fame with corrected p-values and the corresponding FDR.

jdreyf/jdcbioinfo documentation built on May 1, 2024, 4:36 a.m.