jd_clr: Transform raw read counts using centered-log transformation...
In jdwiyanto/mbiome: A convenient wrapper to visualise and run core analyses for multi-variable microbiome data
Description
Usage
Arguments
Value
Description
Transform raw read counts using centered-log transformation approach
Usage
1
jd_clr(ps)
Arguments
ps
a phyloseq object with raw read counts. taxa have to be the columns (ensure that otu_table(ps, taxa_are_rows = F))
Value
a phyloseq object with CLR-transformed read counts (with taxa_are_rows = T)
jdwiyanto/mbiome documentation built on April 18, 2021, 3:31 a.m.
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Description Usage Arguments Value
Description
Transform raw read counts using centered-log transformation approach
Usage
1 | jd_clr(ps)
|
Arguments
ps |
a phyloseq object with raw read counts. taxa have to be the columns (ensure that otu_table(ps, taxa_are_rows = F)) |
Value
a phyloseq object with CLR-transformed read counts (with taxa_are_rows = T)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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