jd_plot_rel: Plots the relative abundance of a microbiome dataset
In jdwiyanto/mbiome: A convenient wrapper to visualise and run core analyses for multi-variable microbiome data
Description
Usage
Arguments
Value
Description
Plots the relative abundance of a microbiome dataset
Usage
1
jd_plot_rel(ps, var, taxrank)
Arguments
ps
A phyloseq object – raw read counts
var
A character string denoting the variable to be plotted. supports multiple variables
taxrank
(for jd_plot_rel) A taxa level to visualise
Value
A ggplot2 object
jdwiyanto/mbiome documentation built on April 18, 2021, 3:31 a.m.
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Description Usage Arguments Value
Description
Plots the relative abundance of a microbiome dataset
Usage
1 | jd_plot_rel(ps, var, taxrank)
|
Arguments
ps |
A phyloseq object – raw read counts |
var |
A character string denoting the variable to be plotted. supports multiple variables |
taxrank |
(for jd_plot_rel) A taxa level to visualise |
Value
A ggplot2 object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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