jd_plot_alpha2: Plots alpha-diversity with statistics
In jdwiyanto/mbiome: A convenient wrapper to visualise and run core analyses for multi-variable microbiome data
Description
Plots alpha-diversity with statistics
Usage
1
jd_plot_alpha2(ps, var, measure = "Shannon", stat = "kruskal.test")
Arguments
ps
A phyloseq object
var
A variable(s) to classify visualisation
measure
Alpha-diversity measures to visualise. Singular value. Defaults to Shannon
stat
Statistical method to conduct. Defaults to Kruskal-Wallis
jdwiyanto/mbiome documentation built on April 18, 2021, 3:31 a.m.
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Description
Plots alpha-diversity with statistics
Usage
1 | jd_plot_alpha2(ps, var, measure = "Shannon", stat = "kruskal.test")
|
Arguments
ps |
A phyloseq object |
var |
A variable(s) to classify visualisation |
measure |
Alpha-diversity measures to visualise. Singular value. Defaults to Shannon |
stat |
Statistical method to conduct. Defaults to Kruskal-Wallis |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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