jd_plot_ord: Ordinates metagenomic data based on variable(s)
In jdwiyanto/mbiome: A convenient wrapper to visualise and run core analyses for multi-variable microbiome data
Description
Ordinates metagenomic data based on variable(s)
Usage
1
jd_plot_ord(ps, var, method = "PCoA", distance = "euclidean")
Arguments
ps
A phyloseq object
var
a character string of the chosen variable. Must be one of the variables in sample_data(ps). Support multiple input variables
method
Ordination plot used. Defaults to PCoA
distance
A distance matrix for the ordination. Defaults to Euclidean
jdwiyanto/mbiome documentation built on April 18, 2021, 3:31 a.m.
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Description
Ordinates metagenomic data based on variable(s)
Usage
1 | jd_plot_ord(ps, var, method = "PCoA", distance = "euclidean")
|
Arguments
ps |
A phyloseq object |
var |
a character string of the chosen variable. Must be one of the variables in sample_data(ps). Support multiple input variables |
method |
Ordination plot used. Defaults to PCoA |
distance |
A distance matrix for the ordination. Defaults to Euclidean |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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