jd_splsda: Runs PLSDA and SPLSDA for the visualisation,...

In jdwiyanto/mbiome: A convenient wrapper to visualise and run core analyses for multi-variable microbiome data

Description

Runs PLSDA and SPLSDA for the visualisation, feature-selection and validation of a microbiome dataset

Usage

jd_splsda(ps, var, valmodel = "all", no.comp, no.repeat)

Arguments

ps	A phyloseq object – raw read count
var	A variable(s) for feature selection
valmodel	A validation model. To be improved. Defaults to 'all'
no.comp	Component numbers for PLSDA and SPLSDA to analyse
no.repeat	No. of repeat to be performed by the model

Value

output files in a new folder listing the compiled details and plots of SPLSDA and SPLSA along with the feature selection plot

jdwiyanto/mbiome documentation built on April 18, 2021, 3:31 a.m.