Man pages for jennasimit/MTFM
Multinomial fine-mapping
| addnull | addnull |
| calckappa | calckappa |
| calcpp | calcpp |
| check.fn | internal function for MPP.fn |
| Gm | Simulated genotype matrix as class SnpMatrix |
| kappaOpt | Kappa selection |
| logdiff | logdiff |
| logsum | logsum |
| make.snp.groups.fn | SNP groups that have marginal PP of inclusion (MPPi) above a... |
| marginalone | Marginal PP for models sharing information between diseases |
| marginalpp | Marginal PP for models sharing information between diseases |
| marginalpp.models | Marginal PP for models sharing information between diseases |
| marginalpp.old | Marginal PP for models sharing information between diseases |
| MPP.fn | Find marginal PP of inclusion for SNPs (MPPi) in marginal... |
| MPP.PP.groups.fn | Summarise, for a set of diseases, posterior probabilities and... |
| p.fn | Prior probability (in log units) for single trait models |
| pp.filter.fn | Filter probability matrix output by threshold |
| PPmarginal.multiple.fast.fn | Approximate (fast) marginal PP for models of a set of... |
| PPmarginal.multiple.fn | Marginal PP for models of a set of diseases, sharing... |
| PP.plot.fn | Plot a matrix of probabilities, where rows are kappa values... |
| sep.fn | internal function for MPP.fn |
| SM2 | A list of GUESSFM output for an instance of simulated data |
| snpGroups | A list of 10 SNP groups in the IL2RA gene. |
