Gm: Simulated genotype matrix as class SnpMatrix
In jennasimit/MTFM: Multinomial fine-mapping

Description Usage Format Details

Simulated data was generated using functions in MFMextra. In this example, there are two diseases that each have two causal variants, of which one is shared beween diseases; both have causal variant rs61839660 in group A; disease 1 has additional causal variant rs56382813 in group D; disease 2 has additional causal variant rs11594656 in group C (SNP groups are given in the snpGroups object of this package). There are 3000 each of disease 1, disease 2, and controls.

Gm

An object of class SnpMatrix with 9000 rows and 26 columns.

This SnpMatrix has 9000 rows and 26 columns. Rows are individuals and are labelled as control (1:3000), case1 (1:3000), or case2 (1:3000). Columns are SNPs and labelled by rsID

jennasimit/MTFM documentation built on Aug. 15, 2019, 6:14 p.m.