make.snp.groups.fn: SNP groups that have marginal PP of inclusion (MPPi) above a...
In jennasimit/MTFM: Multinomial fine-mapping
Description
Usage
Arguments
Value
Description
SNP groups that have marginal PP of inclusion (MPPi) above a threshold for some disease
Usage
1
make.snp.groups.fn(groups, rdis, mppi.thr = 0.05)
Arguments
groups
List consisting of groups: SNP groups formed for a set of diseases; summary: for each group the min r2, max r2 and MPPi for each disease is given; r2: matrix of r2 between each pair of SNPs
rdis
Full set of diseases for fine-mapping
mppi.thr
Threshold for retaining SNP groups that have MPPi > mppi.thr for some disease in rdis
Value
List of SNP groups that summarise fine-mapping results
jennasimit/MTFM documentation built on Aug. 15, 2019, 6:14 p.m.
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Description Usage Arguments Value
Description
SNP groups that have marginal PP of inclusion (MPPi) above a threshold for some disease
Usage
1 | make.snp.groups.fn(groups, rdis, mppi.thr = 0.05)
|
Arguments
groups |
List consisting of groups: SNP groups formed for a set of diseases; summary: for each group the min r2, max r2 and MPPi for each disease is given; r2: matrix of r2 between each pair of SNPs |
rdis |
Full set of diseases for fine-mapping |
mppi.thr |
Threshold for retaining SNP groups that have MPPi > mppi.thr for some disease in rdis |
Value
List of SNP groups that summarise fine-mapping results
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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