Man pages for jennasimit/MTFM
Multi-trait fine-mapping

addnulladdnull
calc.etap_eta/sum(p_eta), but with logs
calckappacalckappa
calcppcalcpp
check.fncalled by MPP.fn
expand.tags.bfExpand tag SNP models
format.mod.fncalled by T1mods.fn
gfm.sel.snps.fnFind "best" tag SNPs for a trait to carry forward in models
kappaOptKappa selection
logdifflogdiff
logsumlogsum
make.snp.groups.fnSNP groups that have marginal PP of inclusion (MPPi) above a...
make.tags.fnGenerate set of tag SNPs with LD r2
marginaloneMarginal PP for models sharing information between diseases
marginalppMarginal PP for models sharing information between diseases
marginalpp2Marginal PP for models sharing information between diseases
marginalpp.modelsMarginal PP for models sharing information between diseases
marginalpp.oldMarginal PP for models sharing information between diseases
MPP.fnFind marginal PP of inclusion for SNPs (MPPi) in marginal...
MPP.PP.groups.fnSummarise, for a set of diseases, posterior probabilities and...
p.fnPrior probability (in log units) for single trait models
pp.filter.fnFilter probability matrix output by threshold
PPmarginal.multiple.fast.fnApproximate (fast) marginal PP for models of a set of...
PPmarginal.multiple.fnMarginal PP for models of a set of diseases, sharing...
PP.plot.fnPlot a matrix of probabilities, where rows are kappa values...
sep.fncalled by MPP.fn
sharedmPP.fnFind best tag SNP models, then expand and calculate joint PP...
T1mods.fnGenerate all possible models for model sizes in a...
jennasimit/MTFM documentation built on May 17, 2018, 11:41 p.m.