addChr2Exclude: Add a globally-applied requirement for filtering out...

View source: R/00.set_globals.R

addChr2ExcludeR Documentation

Add a globally-applied requirement for filtering out scaffolds from all analysis

Description

This function will set the default requirement of filtering out scaffolds from all analysis.

Usage

addChr2Exclude(chr2exclude = c("chrM", "MT", "Pltd", "chrPltd"))

Arguments

chr2exclude

A character vector, NA or NULL, specifying chromosomes or scaffolds to be excluded for InPAS analysis. chrM and alternative scaffolds representing different haplotypes should be excluded.


jianhong/InPAS documentation built on Nov. 5, 2024, 7:45 a.m.