API for jianhong/InPAS
Identification of Novel alternative PolyAdenylation Sites (PAS)

Global functions
$,UTR3eSet-method Man page
$<-,UTR3eSet-method Man page
CPsite_estimation Man page Source code
CPsites Man page Source code
InPAS Man page
InPAS-package Man page
PAscore Man page Source code
PAscore2 Man page Source code
UTR3TotalCoverage Man page Source code
UTR3eSet Man page Source code
UTR3eSet-class Man page
UTR3usage Man page Source code
compensation Source code
covThreshold Man page Source code
coverageCDS Source code
coverageFromBedGraph Man page Source code
coverageRate Man page Source code
depthWeight Man page Source code
distalAdj Man page Source code
fft.smooth Source code
filterRes Man page Source code
fisher.exact.test Man page Source code
gcComp Source code
get.regions.coverage Man page Source code
getCov Man page Source code
getUTR3eSet Man page Source code
getUTR3region Man page Source code
inPAS Man page Source code
intronRegion Source code
lastCDSusage Man page Source code
limmaAnalyze Man page Source code
mapComp Source code
mergeCoverage Source code
optimalSegmentation Man page Source code
polishCPs Man page Source code
prepare4GSEA Man page Source code
proximalAdj Man page Source code
proximalAdjByCleanUpdTSeq Man page Source code
proximalAdjByPWM Man page Source code
removeTmpfile Source code
removeUTR3__UTR3 Man page Source code
searchDistalCPs Man page Source code
searchProximalCPs Man page Source code
seqLen Man page Source code
singleGroupAnalyze Man page Source code
singleSampleAnalyze Man page Source code
sortGR Man page Source code
testUsage Man page Source code
totalCoverage Man page Source code
trimSeqnames Man page Source code
usage4plot Man page Source code
utr3.danRer10 Man page
utr3.hg19 Man page
utr3.mm10 Man page
utr3Annotation Man page Source code
utr3UsageEstimation Man page Source code
valley Man page Source code
zScoreThrethold Man page Source code
jianhong/InPAS documentation built on Nov. 3, 2018, 9:08 a.m.