View source: R/18.get_UTR3CDS.R
get_UTR3CDS | R Documentation |
Get 3' UTRs and their last CDS regions based on CP sites
get_UTR3CDS(
sqlite_db,
chr.utr3,
outdir = getInPASOutputDirectory(),
min.length.diff = 200
)
sqlite_db |
A path to the SQLite database for InPAS, i.e. the output of setup_sqlitedb(). |
chr.utr3 |
An object of GenomicRanges::GRanges, specifying UTR3
GRanges for a chromosome. It must be one element of an output of
|
outdir |
A character(1) vector, a path with write permission for storing InPAS analysis results. If it doesn't exist, it will be created. |
min.length.diff |
An integer(1) vector, specifying minimal length difference between proximal and distal APA sites which should be met to be considered for differential APA analysis. Default is 200 bp. |
An object of GenomicRanges::GRanges containing GRanges for UTRs with alternative CP sites and the corresponding last CDSs.
Jianhong Ou, Haibo Liu
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