get_depthWeight: Calculate the depth weight for each sample or each...
In jianhong/InPAS: Identify Novel Alternative PolyAdenylation Sites (PAS) from RNA-seq data

get_depthWeight

R Documentation

Calculate the depth weight for each sample or each experimental condition

Calculate the depth weight for each sample of non-hugeData or each experimental condition for hugeData: depth/mean(depth)

get_depthWeight(metadata, hugeData)

`metadata`	A data frame containing the metadata for a RNA-seq experiment, which can be extract from the SQLite database set up by `setup_sqlitedb()`
`hugeData`	A logical(1), indicating whether it is huge data

A named numeric vector containing depth weight for each sample for non-hugeData, or depth weight for each condition if hugeData.

Jianhong Ou, Haibo Liu

jianhong/InPAS documentation built on Nov. 5, 2024, 7:45 a.m.

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