find_minMSEDistr: Visualization of MSE profiles, 3' UTR coverage and minimal...

In jianhong/InPAS: Identify Novel Alternative PolyAdenylation Sites (PAS) from RNA-seq data

Visualization of MSE profiles, 3' UTR coverage and minimal MSE distribution

Description

Visualization of MSE profiles, 3' UTR coverage and minimal MSE distribution

Usage

find_minMSEDistr(
  CPs,
  outdir = NULL,
  MSE.plot = "MSE.pdf",
  coverage.plot = "coverage.pdf",
  min.MSE.to.end.distr.plot = "min.MSE.to.end.distr.pdf"
)

Arguments

CPs	A list, output from search_proximalCPs() or adjust_distalCPs() or adjust_proximalCPs()
outdir	A character(1) vector, specifying the output directory
MSE.plot	A character(1) vector, specifying a PDF file name for outputting plots of MSE profiles. No directory path is allowed.
coverage.plot	A character(1) vector, specifying a PDF file name for outputting per-sample coverage profiles. No directory path is allowed.
min.MSE.to.end.distr.plot	A character(1) vector, specifying a PDF file name for outputting histograms showing minimal MSE distribution relative to longer 3' UTR end. No directory path is allowed.

jianhong/InPAS documentation built on Nov. 5, 2024, 7:45 a.m.