run_fisherExactTest: Run Fisher Exact Test for differential usage of 3' UTRs for a...

In jianhong/InPAS: Identify Novel Alternative PolyAdenylation Sites (PAS) from RNA-seq data

Run Fisher Exact Test for differential usage of 3' UTRs for a two-group experimental design

Description

Run Fisher Exact Test for differential usage of 3' UTRs for a two-group experimental design

Usage

run_fisherExactTest(UTR3eset, gp1, gp2)

Arguments

UTR3eset	An object of UTR3eSet, output of get_UTR3eSet()
gp1	tag names of group 1
gp2	tag names of group 2

Value

a matrix of test results

Author(s)

Jianhong Ou

See Also

run_singleSampleAnalysis() for a single-sample APA analysis,run_singleGroupAnalysis() for a single-group sample APA analysis, run_limmaAnalysis() for limma-based APA analysis of complex experimental design

jianhong/InPAS documentation built on Nov. 5, 2024, 7:45 a.m.