run_singleSampleAnalysis: do APA analysis for a single sample
In jianhong/InPAS: Identify Novel Alternative PolyAdenylation Sites (PAS) from RNA-seq data
View source: R/23.run_singleSampleAnalysis.R
run_singleSampleAnalysis R Documentation
do APA analysis for a single sample
Description
do APA event analysis for a single sample Using Poisson Hidden
Markov models
Usage
run_singleSampleAnalysis(UTR3eset)
Arguments
UTR3eset
the output of get_UTR3eSet()
Details
the test will be performed by comparing a two-state versus an
one-state Poisson Hidden Markov models.
Value
a matrix containing test results
Author(s)
Jianhong Ou
See Also
UTR3eSet, get_UTR3eSet(), depmixS4::depmix()
Examples
path <- system.file("extdata", package = "InPAS")
load(file.path(path, "eset.MAQC.rda"))
res <- InPAS:::run_singleSampleAnalysis(eset)
jianhong/InPAS documentation built on May 8, 2024, 12:12 a.m.
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View source: R/23.run_singleSampleAnalysis.R
| run_singleSampleAnalysis | R Documentation |
do APA analysis for a single sample
Description
do APA event analysis for a single sample Using Poisson Hidden Markov models
Usage
run_singleSampleAnalysis(UTR3eset)
Arguments
UTR3eset |
the output of |
Details
the test will be performed by comparing a two-state versus an one-state Poisson Hidden Markov models.
Value
a matrix containing test results
Author(s)
Jianhong Ou
See Also
UTR3eSet, get_UTR3eSet(), depmixS4::depmix()
Examples
path <- system.file("extdata", package = "InPAS")
load(file.path(path, "eset.MAQC.rda"))
res <- InPAS:::run_singleSampleAnalysis(eset)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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