API for jianhong/trackViewer
A R/Bioconductor package with web interface for drawing elegant interactive tracks or lollipop plot to facilitate integrated analysis of multi-omics data
| Global functions | |
|---|---|
| $,track-method | Man page |
| $<-,track-method | Man page |
| ARA | Man page Source code |
| GIoperator | Man page Source code |
| GRbin | Source code |
| GRoperator | Man page Source code |
| Y1pos | Source code |
| addArrowMark | Man page Source code |
| addGuideLine | Man page Source code |
| addInteractionAnnotation | Man page Source code |
| addObjCoor | Source code |
| addPoints | Source code |
| archPlot | Source code |
| bezier | Source code |
| bezier0 | Source code |
| breakPointByBin | Source code |
| browseTracks | Man page Source code |
| browseTracks-shiny | Man page |
| browseTracksOutput | Man page Source code |
| calGenePos | Source code |
| calTickPos | Source code |
| checkConnectionPoints | Source code |
| checkCoolFile | Source code |
| cleanDataMcols | Source code |
| condenceGRs | Source code |
| convertFont | Source code |
| convertHeight2NPCnum | Source code |
| convertNum2HumanNum | Source code |
| cooler_bins | Source code |
| cooler_indexes | Source code |
| cooler_pixels | Source code |
| coolfileGetByPath | Source code |
| coolfilePathName | Source code |
| coolfileRootName | Source code |
| coverageGR | Man page Source code |
| curveMaker | Source code |
| cutSNP | Source code |
| dandelion.plot | Man page Source code |
| disjoinGRs | Source code |
| drawXaxis | Source code |
| drawXscale | Source code |
| drawYaxis | Source code |
| filterThisLabel | Source code |
| filterTracks | Source code |
| filter_points | Source code |
| findOlPos | Source code |
| fixXY | Source code |
| geneModelFromTxdb | Man page Source code |
| geneTrack | Man page Source code |
| getColNum | Source code |
| getCurTrackViewport | Man page Source code |
| getCutPos | Source code |
| getDrawLabelParam | Source code |
| getFourPoints | Source code |
| getGeneIDsFromTxDb | Man page Source code |
| getHeight | Source code |
| getIndexInMatrix | Source code |
| getLocation | Man page Source code |
| getMinFont | Source code |
| getMirrorPoint | Source code |
| getObjsPos | Source code |
| getOverlapCoor | Source code |
| getPointInNodeCircle | Source code |
| getSrt | Source code |
| getStartConnectionPoints | Source code |
| getYheight | Source code |
| getYlim | Source code |
| get_area_4edge_polygon | Source code |
| get_area_triangle | Source code |
| gi2track | Man page Source code |
| gieStain | Man page Source code |
| grid.circle1 | Source code |
| grid.dandelion | Source code |
| grid.diamond | Source code |
| grid.square | Source code |
| grid.star | Source code |
| grid.triangle_point_down | Source code |
| grid.triangle_point_up | Source code |
| gridPlot | Man page Source code |
| guessFormat | Source code |
| handleLabelParams | Source code |
| handleLegend | Source code |
| handleRanges | Source code |
| hrScale | Source code |
| ideogramPlot | Man page Source code |
| importBam | Man page Source code |
| importData | Man page Source code |
| importGInteractions | Man page Source code |
| importScSeqScore | Man page Source code |
| importScore | Man page Source code |
| inRange | Source code |
| in_cbn | Source code |
| in_rect | Source code |
| isMcool | Source code |
| is_color | Source code |
| is_null_na | Source code |
| jitterLables | Source code |
| k_smooth | Source code |
| listChromosomes | Man page Source code |
| listResolutions | Man page Source code |
| loadIdeogram | Man page Source code |
| locateScale | Source code |
| lolliplot | Man page Source code |
| loopBouquetPlot | Man page Source code |
| maxStringWidth | Source code |
| merge_shape | Source code |
| mirrorP | Source code |
| moveNodes | Source code |
| objHeight | Source code |
| objWidth | Source code |
| objX | Source code |
| objY | Source code |
| optFontSize | Source code |
| optFontSize1 | Source code |
| optimizeStyle | Man page Source code |
| orderedGR | Source code |
| overlapNodes | Source code |
| overlap_region | Source code |
| parse2GRanges | Man page Source code |
| parseWIG | Man page Source code |
| plotBouquet | Source code |
| plotDataTrack | Source code |
| plotFeatureLegend | Source code |
| plotFeatures | Source code |
| plotGRanges | Man page Source code |
| plotGeneModel | Source code |
| plotGeneTrack | Source code |
| plotIdeo | Man page Source code |
| plotInteractionDataTrack | Source code |
| plotLegend | Source code |
| plotLollipopData | Source code |
| plotLollipops | Source code |
| plotOneIdeo | Man page Source code |
| plotScSeqTrack | Source code |
| plotStartEndPoints | Source code |
| plotTrack | Source code |
| plot_grid_xaxis | Source code |
| pointsDistance | Source code |
| pos | Man page |
| pos-class | Man page |
| prettyMark | Source code |
| putGeneYlab | Source code |
| putYlab | Source code |
| reAdjustLabels | Source code |
| reduce,GInteractions | Man page |
| reduce,GInteractions-method | Man page |
| reduce_cbn | Source code |
| renderbrowseTracks | Man page Source code |
| reorderEdgeLinkBySize | Source code |
| resampleData | Source code |
| resampleDataByFun | Source code |
| resampleData_old | Source code |
| rgb2hex | Source code |
| rotatePoint | Source code |
| safeEndPoint | Source code |
| safeObjCoor | Source code |
| safeSeq | Source code |
| seqlevels,track-method | Man page |
| seqlevelsStyle,track-method | Man page |
| seqlevelsStyle<-,track-method | Man page |
| seqlevelsStyle<-,trackList-method | Man page |
| setFeatureLayerID | Source code |
| setTrackStyleParam | Man page |
| setTrackStyleParam,track,character,ANY-method | Man page |
| setTrackStyleParam,track,character-method | Man page |
| setTrackViewerStyleParam | Man page |
| setTrackViewerStyleParam,trackViewerStyle,character,ANY-method | Man page |
| setTrackViewerStyleParam,trackViewerStyle,character-method | Man page |
| setTrackXscaleParam | Man page |
| setTrackXscaleParam,track,character,ANY-method | Man page |
| setTrackXscaleParam,track,character-method | Man page |
| setTrackYaxisParam | Man page |
| setTrackYaxisParam,track,character,ANY-method | Man page |
| setTrackYaxisParam,track,character-method | Man page |
| show,track-method | Man page |
| sort_pts | Source code |
| track | Man page |
| track-class | Man page |
| trackList | Man page Source code |
| trackList-class | Man page |
| trackStyle | Man page |
| trackStyle-class | Man page |
| trackViewer | Man page |
| trackViewer-package | Man page |
| trackViewerStyle | Man page Source code |
| trackViewerStyle-class | Man page |
| viewGene | Man page Source code |
| viewTracks | Man page Source code |
| xscale | Man page |
| xscale-class | Man page |
| xysmooth | Source code |
| yaxisStyle | Man page |
| yaxisStyle-class | Man page |
