plotIdeo: plot ideogram

In jianhong/trackViewer: A R/Bioconductor package with web interface for drawing elegant interactive tracks or lollipop plot to facilitate integrated analysis of multi-omics data

plot ideogram

Description

plot ideogram for one chromosome

Usage

plotIdeo(
  ideo,
  chrom = seqlevels(ideo)[1],
  colorSheme = gieStain(),
  gp = gpar(fill = NA),
  ...
)

Arguments

ideo	output of loadIdeogram.
chrom	A length 1 character vector of chromosome name.
colorSheme	A character vector of giemsa stain colors.
gp	parameters used for grid.roundrect.
...	parameters not used.

Examples

## Not run: 
ideo <- loadIdeogram("hg38")
library(grid)
grid.newpage()
plotIdeo(ideo)

## End(Not run)

jianhong/trackViewer documentation built on Nov. 10, 2024, 10:33 a.m.