parseWIG: convert WIG format track to BED format track

In jianhong/trackViewer: A R/Bioconductor package with web interface for drawing elegant interactive tracks or lollipop plot to facilitate integrated analysis of multi-omics data

convert WIG format track to BED format track

Description

convert WIG format track to BED format track for a given range

Usage

parseWIG(trackScore, chrom, from, to)

Arguments

trackScore	an object of track with WIG format
chrom	sequence name of the chromosome
from	start coordinate
to	end coordinate

Value

an object of track

Examples

extdata <- system.file("extdata", package="trackViewer", mustWork=TRUE)
repA <- importScore(file.path(extdata, "cpsf160.repA_-.wig"),
                    file.path(extdata, "cpsf160.repA_+.wig"),
                    format="WIG")
strand(repA$dat) <- "-"
strand(repA$dat2) <- "+"
parseWIG(repA, chrom="chr11", from=122929275, to=122930122)

jianhong/trackViewer documentation built on Nov. 5, 2024, 7:48 a.m.