listChromosomes: List the available chromosome

In jianhong/trackViewer: A R/Bioconductor package with web interface for drawing elegant interactive tracks or lollipop plot to facilitate integrated analysis of multi-omics data

List the available chromosome

Description

List the chromosomes available in the file.

Usage

listChromosomes(file, format = c("hic", "cool"))

Arguments

file	character(1). File name of .hic or .cool/.mcool/.scool
format	character(1). File format, "hic" or "cool".

Examples

hicfile <- system.file("extdata", "test_chr22.hic", package="trackViewer")
listChromosomes(hicfile)
coolfile <- system.file("extdata", "test.mcool", package="trackViewer")
listChromosomes(coolfile, format="cool")

jianhong/trackViewer documentation built on Nov. 10, 2024, 10:33 a.m.