getGeneIDsFromTxDb: get gene ids by genomic location
In jianhong/trackViewer: A R/Bioconductor package with web interface for drawing elegant interactive tracks or lollipop plot to facilitate integrated analysis of multi-omics data
View source: R/getGeneIDsFromTxDb.R
getGeneIDsFromTxDb R Documentation
get gene ids by genomic location
Description
retrieve gene ids from txdb object by genomic location.
Usage
getGeneIDsFromTxDb(gr, txdb)
Arguments
gr
GRanges object.
txdb
An object of TxDb.
Value
A character vector of gene ids
Examples
library(TxDb.Hsapiens.UCSC.hg19.knownGene)
gr <- parse2GRanges("chr11:122,830,799-123,116,707")
ids <- getGeneIDsFromTxDb(gr, TxDb.Hsapiens.UCSC.hg19.knownGene)
jianhong/trackViewer documentation built on Nov. 5, 2024, 7:48 a.m.
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View source: R/getGeneIDsFromTxDb.R
| getGeneIDsFromTxDb | R Documentation |
get gene ids by genomic location
Description
retrieve gene ids from txdb object by genomic location.
Usage
getGeneIDsFromTxDb(gr, txdb)
Arguments
gr |
GRanges object. |
txdb |
An object of |
Value
A character vector of gene ids
Examples
library(TxDb.Hsapiens.UCSC.hg19.knownGene)
gr <- parse2GRanges("chr11:122,830,799-123,116,707")
ids <- getGeneIDsFromTxDb(gr, TxDb.Hsapiens.UCSC.hg19.knownGene)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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