Files in jianhong/trackViewer
A R/Bioconductor package with web interface for drawing elegant interactive tracks or lollipop plot to facilitate integrated analysis of multi-omics data
DESCRIPTION
NAMESPACE
NEWS
R/ARA.R
R/GIoperator.R
R/GRoperator.R
R/addArrowMark.R
R/addGuideLine.R
R/addInteractionAnnotation.R
R/allclasses.R
R/browseTracks.R
R/cooler.R
R/coverageGR.R
R/dandelion.plot.R
R/geneModelFromTxdb.R
R/geneTrack.R
R/getCurTrackViewport.R
R/getGeneIDsFromTxDb.R
R/getHeight.R
R/getLocation.R
R/gi2track.R
R/grid.dandelion.R
R/grid.lollipop.R
R/ideogramPlot.R
R/importBam.R
R/importData.R
R/importGInteractions.R
R/importScSeqScore.R
R/importScore.R
R/listChromosomes.R
R/listResolutions.R
R/loadIdeogram.R
R/lollipop.plot.R
R/loopBouquetPlot.R
R/mdsPlot.R
R/mdsPlotHelper.R
R/optimizeStyle.R
R/parse2GRanges.R
R/parseWIG.R
R/plotGRanges.R
R/plotGeneModel.R
R/plotGeneTrack.R
R/plotIdeo.R
R/plotInteractionDataTrack.R
R/plotLollipopData.R
R/plotLollipops.R
R/plotOneIdeo.R
R/plotScSeqTrack.R
R/plotTrack.R
R/privateUtil.R
R/reduce_GInteractions.R
R/trackViewerPackage.R
R/view3dStructure.R
R/viewGene.R
R/viewTracks.R
README.md
inst/CITATION
inst/extdata/4DNFI1UEG1HD.R
inst/extdata/4DNFI1UEG1HD.chr21.FLAMINGO.res.rds
inst/extdata/4DNFI1UEG1HD.feature.gr.rds
inst/extdata/cpsf160.repA_+.wig
inst/extdata/cpsf160.repA_-.wig
inst/extdata/cpsf160.repB_+.wig
inst/extdata/cpsf160.repB_-.wig
inst/extdata/ctcf.sample.rds
inst/extdata/fox2.bed
inst/extdata/gi.rds
inst/extdata/ideo.hg38.rds
inst/extdata/map-pin-red.xml
inst/extdata/methy.bed
inst/extdata/nij.chr6.51120000.53200000.gi.rds
inst/extdata/test.cool
inst/extdata/test.mcool
inst/extdata/testBp.hic
inst/extdata/testFrag.hic
inst/extdata/test_chr22.hic
inst/htmlwidgets/browseTracks.js
inst/htmlwidgets/browseTracks.yaml
inst/htmlwidgets/lib/d3/d3.v4.min.js
inst/htmlwidgets/lib/saveSvgAsPng/saveSvgAsPng.js
inst/unitTests/test_coolerFile.R
inst/unitTests/test_coverage.R
man/ARA.Rd
man/GIoperator.Rd
man/GRoperator.Rd
man/addArrowMark.Rd
man/addGuideLine.Rd
man/addInteractionAnnotation.Rd
man/browseTracks-shiny.Rd
man/browseTracks.Rd
man/coverageGR.Rd
man/dandelion.plot.Rd
man/geneModelFromTxdb.Rd
man/geneTrack.Rd
man/getCurTrackViewport.Rd
man/getGeneIDsFromTxDb.Rd
man/getLocation.Rd
man/gi2track.Rd
man/gieStain.Rd
man/gridPlot.Rd
man/ideogramPlot.Rd
man/importBam.Rd
man/importData.Rd
man/importGInteractions.Rd
man/importScSeqScore.Rd
man/importScore.Rd
man/listChromosomes.Rd
man/listResolutions.Rd
man/loadIdeogram.Rd
man/lolliplot.Rd
man/loopBouquetPlot.Rd
man/mdsPlot.Rd
man/optimizeStyle.Rd
man/parse2GRanges.Rd
man/parseWIG.Rd
man/plotGRanges.Rd
man/plotIdeo.Rd
man/plotOneIdeo.Rd
man/pos-class.Rd
man/reduce-GInteractions-method.Rd
man/trackList-class.Rd
man/trackStyle-class.Rd
man/trackViewer-package.Rd
man/trackViewerStyle-class.Rd
man/view3dStructure.Rd
man/viewGene.Rd
man/viewTracks.Rd
man/xscale-class.Rd
man/yaxisStyle-class.Rd
tests/runTests.R
vignettes/changeTracksStyles.Rmd
vignettes/dandelionPlot.Rmd
vignettes/lollipopPlot.Rmd
vignettes/plotInteractionData.Rmd
vignettes/trackViewer.Rmd
