Man pages for jianhong/trackViewer
A R/Bioconductor package with web interface for drawing elegant interactive tracks or lollipop plot to facilitate integrated analysis of multi-omics data
| addArrowMark | Add arrow mark to the figure at a given position |
| addGuideLine | Add guide lines to the tracks |
| addInteractionAnnotation | Add annotation markers to the figure at a given position |
| ARA | Aggregate Region Analysis |
| browseTracks | browse tracks |
| browseTracks-shiny | Shiny bindings for browseTracks |
| coverageGR | calculate coverage |
| dandelion.plot | dandelion.plots |
| geneModelFromTxdb | Prepare gene model from an object of TxDb |
| geneTrack | track from TxDb |
| getCurTrackViewport | Get current track viewport |
| getGeneIDsFromTxDb | get gene ids by genomic location |
| getLocation | get genomic location by gene symbol |
| gi2track | convert GInteractions to track object |
| gieStain | color sheme for the schema for Chromosome Band (Ideogram) |
| GIoperator | GInteractions operator |
| gridPlot | plot GRanges metadata |
| GRoperator | GRanges operator |
| ideogramPlot | plot ideogram with data |
| importBam | Reading data from a BAM file |
| importData | Reading data from a BED or WIG file to RleList |
| importGInteractions | Reading data from a ginteractions, hic, cool, or validPairs... |
| importScore | Reading data from a BED or WIG file |
| importScSeqScore | plot tracks for single cell RNAseq |
| listChromosomes | List the available chromosome |
| listNormalizations | List the available normalizations |
| listResolutions | List the available resolutions |
| loadIdeogram | load ideogram from UCSC |
| lolliplot | Lolliplots |
| optimizeStyle | Optimize the style of plot |
| parse2GRanges | parse text into GRanges |
| parseWIG | convert WIG format track to BED format track |
| plotGRanges | plot GRanges data |
| plotIdeo | plot ideogram |
| plotOneIdeo | plot ideogram with data for one chromosome |
| pos-class | Class '"pos"' |
| reduce-GInteractions-method | Reduce method for 'GInteractions' |
| trackList-class | List of tracks |
| trackStyle-class | Class '"trackStyle"' |
| trackViewer-package | Minimal designed plotting tool for genomic data |
| trackViewerStyle-class | Class '"trackViewerStyle"' |
| viewGene | plot tracks based on gene name |
| viewTracks | plot the tracks |
| xscale-class | Class '"xscale"' |
| yaxisStyle-class | Class '"yaxisStyle"' |
