Man pages for jinhyunju/icreport
Tools for creating a visual summary of matrix decomposition results.
| chr_axis_creator | Function that generates the x axis ticks for chromosome... |
| component_association_test | Testing the association between independent component... |
| covar_association_check | Custom ICA function for analyzing gene expression data. |
| create_h5_file | Creating eQTL input hdf5 file templates. |
| fastICA_gene_expr | ICA analysis based on the package fastICA |
| gene_expr_ica | Custom ICA function for analyzing gene expression data. |
| gene_expr_pca | Custom PCA function for analyzing gene expression data. |
| genotypes_pca | Custom PCA function for analyzing genotype SNP data. |
| ggplot_add_theme | Adding customized black and white theme to ggplot objects and... |
| h5_add_data | Adding data to a given hdf5 file |
| h5_add_pheno_info | Adding gene information to an HDF5 file |
| h5_add_snp_info | Adding SNP information to an HDF5 file |
| h5_ica | Custom ICA function for analyzing gene expression data. |
| h5report | Generating ICA or PCA summary reports. |
| ica_covar_check | Custom ICA function for analyzing gene expression data. |
| ica_report | Generating ICA or PCA summary reports. |
| ica_R_par | ICA parameter estimation function |
| ic_covariate_association_test | Testing the association between independent component... |
| IC_variance_calc | Calculating the variation explained by each component |
| load_h5_data | Loading data from a given hdf5 file |
| multiplot | Plotting multiple ggplots |
| peak_detection | Labeling peaks for each independent component |
| plot_coeff_w_legend | Plotting the coefficients for a single IC |
| plot_component | Plotting the gene weights of a single component |
| plot_component_chr | Plotting function that indicates gene position on chromosome |
| plot_component_grid | Simplified Plotting function that indicates gene position on... |
| plot_component_hist | Plotting a histogram of gene weights of a single component |
| pre_process_data | Pre-processing of the data |
| report2me | Generating ICA or PCA summary reports. |
| report2mev2 | Generating ICA or PCA summary reports. |
| run_ica | Custom ICA function for analyzing gene expression data. |
| run_pca | Custom PCA function for analyzing gene expression data. |
