h5_add_snp_info: Adding SNP information to an HDF5 file

In jinhyunju/icreport: Tools for creating a visual summary of matrix decomposition results.

Description

Use in-memory objects to add SNP information to a given HDF5 file

Usage

h5_add_snp_info(file_name = NULL, snp_id = NULL, snp_chr = NULL,
  snp_pos = NULL)

Arguments

file_name	Name of the HDF5 file to add the information to
snp_id	Vector of genotype ids that match the feature ids used in saving the genotype matrix.
snp_chr	Vector of genotype chromosomes in the same order as snp_id entries.
snp_pos	Vector of genotype positions in the same order as snp_id entries.
snp_info	Dataframe with SNP information for all SNPs present in genotypes/matrix

Value

Saves the given objects into the hdf5 generated by the create_eqtl_input_h5() function.

jinhyunju/icreport documentation built on May 19, 2019, 10:35 a.m.