h5_add_pheno_info: Adding gene information to an HDF5 file

In jinhyunju/icreport: Tools for creating a visual summary of matrix decomposition results.

Description

Use in-memory objects to add gene information to a given HDF5 file

Usage

h5_add_pheno_info(file_name = NULL, pheno_id = NULL, pheno_chr = NULL,
  pheno_start = NULL, pheno_end = NULL, pheno_entrez = NULL,
  pheno_symbol = NULL)

Arguments

file_name	Name of the HDF5 file to add the information to
gene_info	Dataframe with gene information for all genes present in genotypes/matrix
id_col	Column name of gene_info that contains id information
chr_col	Column name of gene_info that contains chromosome information
start_col	Column name of gene_info that contains start positions
end_col	Column name of gene_info that contains end positions
entrez_col	Column name of gene_info that contains entrez ids
symbol_col	Column name of gene_info that contains gene symbols

Value

Saves the given objects into the hdf5 generated by the create_eqtl_input_h5() function.

jinhyunju/icreport documentation built on May 19, 2019, 10:35 a.m.