plot_component_chr: Plotting function that indicates gene position on chromosome

In jinhyunju/icreport: Tools for creating a visual summary of matrix decomposition results.

Description

The function generates a plot with gene weights for individual ICs according to their position on each chromosome.

Usage

plot_component_chr(s, geneinfo.df, x.axis, plot.title, peaks = TRUE,
  peakresult = NULL)

Arguments

s	A single component
geneinfo.df	Gene position information dataframe
x.axis	Positions of the chromosome borders for coloring.
plot.title	Character title of the plot
peaks	TRUE shows peaks in red, FALSE leaves everything black
peakresult	Pre-calculated peak positions, if not supplied peaks will be defined as values lying out of 2 standard deviations.

jinhyunju/icreport documentation built on May 19, 2019, 10:35 a.m.