jipingw/RiboDiPA: Differential pattern analysis for Ribo-seq data
This package performs differential pattern analysis for Ribo-seq data. It identifies genes with significantly different patterns in the ribosome footprint between two conditions. RiboDiPA contains five major components including bam file processing, P-site mapping, data binning, differential pattern analysis and footprint visualization.
Getting started
Browse package contents
Package details |
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| Author | Keren Li [aut], Matt Hope [aut], Xiaozhong Wang [aut], Ji-Ping Wang [aut, cre] |
| Bioconductor views | Alignment Coverage DataImport DifferentialExpression GeneExpression GeneRegulation ImmunoOncology Normalization QualityControl RNASeq RiboSeq Sequencing Software |
| Maintainer | Ji-Ping Wang <jzwang@northwestern.edu> |
| License | LGPL (>= 3) |
| Version | 1.15.1 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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