API for jkruppa/viralDetectTools
Modules for a viral detection pipeline
| Global functions | |
|---|---|
| NHS_10001_consensus | Man page |
| NHS_10001_count_tbl | Man page |
| NHS_10001_map_aa_list | Man page |
| NHS_10001_map_dna_list | Man page |
| TIME | Man page |
| aa_info_db | Man page |
| aa_seqs | Man page |
| artificial_genome_mapping | Man page |
| build_index | Man page |
| build_sample_info | Man page |
| check_host | Man page |
| collapse_df | Man page |
| coverage_filter | Man page |
| dna_seqs | Man page |
| empty_map_pep_list | Man page |
| ete2_plot | Man page |
| fastq_quality_control | Man page |
| fastq_trimmer | Man page |
| fq2fa | Man page |
| generate_decoy_reads | Man page |
| generate_read | Man page |
| get_bowtie2_cmd | Man page |
| get_consensus_df | Man page |
| get_pauda_hits | Man page |
| get_seq_chunks_by_threshold | Man page |
| get_sub_files | Man page |
| infected_fastq | Man page |
| is.named | Man page |
| map_dna_ref | Man page |
| map_pep_ref | Man page |
| mapping_dna_plot | Man page |
| ord_findings | Man page |
| plot_time_sample | Man page |
| prepare_file_list | Man page |
| random_dna_seq | Man page |
| run_batch_job | Man page |
| sam2bam_serial | Man page |
| set_par_list | Man page |
| set_program_list | Man page |
| setup_aa_info_sample_sqlite | Man page |
| setup_aa_info_sqlite | Man page |
| setup_species_info_sqlite | Man page |
| strain_info_db | Man page |
| talk | Man page |
| tbl_sqlite_check | Man page |
