setup_species_info_sqlite: Function to build up the species_info_sqlite database

Description Usage Arguments Details Author(s)

Description

The function generates the SQlite databse needed for the plotting.

Usage

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setup_species_info_sqlite(genebank_id, length, description, tax_id = NA,
  mol_type = NA, strain = NA, accession = NA, organism = NA, db_file)

Arguments

genebank_id

Vector of genebank_ids

length

Length vector of the sequence

description

Description vector of the genebank_ids

tax_id

NCBI tax_id connected with the genebank_ids

mol_type

Molecular type

strain

Strain

accession

Accession number

organism

Organsim

db_file

File path to save the sqlite3 database

Details

The function generates the SQlite databse needed for the plotting of the hit seqeunces.

Author(s)

Jochen Kruppa


jkruppa/viralDetectTools documentation built on May 30, 2019, 3:41 p.m.