API for jkruppa/viralDetectTools
Modules for a viral detection pipeline

Global functions
NHS_10001_consensus Man page
NHS_10001_count_tbl Man page
NHS_10001_map_aa_list Man page
NHS_10001_map_dna_list Man page
TIME Man page Source code
aa_info_db Man page
aa_seqs Man page
artificial_genome_mapping Man page Source code
build_index Man page Source code
build_sample_info Man page Source code
check_host Man page Source code
collapse_df Man page Source code
coverage_filter Man page Source code
dna_seqs Man page
empty_map_pep_list Man page Source code
ete2_plot Man page Source code
fastq_quality_control Man page Source code
fastq_trimmer Man page Source code
fq2fa Man page Source code
generate_decoy_reads Man page Source code
generate_read Man page Source code
get_bowtie2_cmd Man page Source code
get_consensus_df Man page Source code
get_pauda_hits Man page Source code
get_seq_chunks_by_threshold Man page Source code
get_sub_files Man page Source code
infected_fastq Man page
is.named Man page Source code
map_dna_ref Man page Source code
map_pep_ref Man page Source code
mapping_dna_plot Man page Source code
ord_findings Man page Source code
plot_time_sample Man page Source code
prepare_file_list Man page Source code
random_dna_seq Man page Source code
run_batch_job Man page Source code
sam2bam_serial Man page Source code
set_par_list Man page Source code
set_program_list Man page Source code
setup_aa_info_sample_sqlite Man page Source code
setup_aa_info_sqlite Man page Source code
setup_species_info_sqlite Man page Source code
strain_info_db Man page
talk Man page Source code
tbl_sqlite_check Man page
jkruppa/viralDetectTools documentation built on Jan. 22, 2018, 3:38 p.m.