get_sub_files: Gather the files for one sample run
In jkruppa/viralDetectTools: Modules for a viral detection pipeline

The function gets the file names and locations of a single sample

1 2	get_sub_files(sample, batch = NULL, in_dir = NULL, out_dir = NULL, name = NULL, gz = FALSE)

`sample`	Name of the sample, which is also part of the file name
`batch`	Name of the batch [default = NULL]
`in_dir`	Name of the directory, where the fastq files are stored
`out_dir`	Name of the directory, where the files should be written
`name`	Name of the sample [expired]
`gz`	Are the fastq files packed or not? [default = FALSE]