NHS_10001_map_aa_list: Output of map_pep_ref
In jkruppa/viralDetectTools: Modules for a viral detection pipeline
Description
Usage
Format
Source
Description
A example output of map_pep_ref.
Usage
1
Format
A list with two data.frame:
$count_df
- genebank_id
Genbank reference ID
- count_prot
Number of translated reads mapped to the genebank ID reference
$alignment_df
- qname
Read name i.e. query name
- prot_id
Protein reference ID
- pos_start
Poistion start on the reference DNA sequence
- pos_end
Poistion end on the reference DNA sequence
- score_bit
Mapping quality
- score_expected
e-value of Blast
- ident
How equal is the reference to the read?
- genebank_id
Genebank ID of the reference sequence
Source
ftp://ftp.ncbi.nlm.nih.gov/genbank
jkruppa/viralDetectTools documentation built on May 30, 2019, 3:41 p.m.
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Description Usage Format Source
Description
A example output of map_pep_ref.
Usage
1 |
Format
A list with two data.frame: $count_df
- genebank_id
Genbank reference ID
- count_prot
Number of translated reads mapped to the genebank ID reference
$alignment_df
- qname
Read name i.e. query name
- prot_id
Protein reference ID
- pos_start
Poistion start on the reference DNA sequence
- pos_end
Poistion end on the reference DNA sequence
- score_bit
Mapping quality
- score_expected
e-value of Blast
- ident
How equal is the reference to the read?
- genebank_id
Genebank ID of the reference sequence
Source
ftp://ftp.ncbi.nlm.nih.gov/genbank
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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