check_host: Experimental function to check the host by blastn
In jkruppa/viralDetectTools: Modules for a viral detection pipeline
Description
Usage
Arguments
Details
Value
Author(s)
Description
A experimental function, which checks the host using blastn
Usage
1
check_host(file, force = FALSE)
Arguments
file
Infile of the sample, see get_sub_files.
force
Should all files be overwritten?
Details
This very experimental function uses blast and a subset of 100
read to determine the host of the sample. This works sometimes,
but it is very time consuming, with sometimes little gain.
Value
data.frame
Author(s)
Jochen Kruppa
jkruppa/viralDetectTools documentation built on May 30, 2019, 3:41 p.m.
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Description Usage Arguments Details Value Author(s)
Description
A experimental function, which checks the host using blastn
Usage
1 | check_host(file, force = FALSE)
|
Arguments
file |
Infile of the sample, see |
force |
Should all files be overwritten? |
Details
This very experimental function uses blast and a subset of 100 read to determine the host of the sample. This works sometimes, but it is very time consuming, with sometimes little gain.
Value
data.frame
Author(s)
Jochen Kruppa
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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