Description Usage Arguments Details Value Author(s)
Caution! This function will take much time, because it is only optimised for small sequences.
1 | get_consensus_df(hits, out_file, par_list)
|
hits |
Genebank IDs of the hits |
out_file |
File path to the results dir |
par_list |
Parameter given by the par_list(), see
|
This function is based on samtools to get the reference to the hit. Further the consensus is generated by adding blanks "-" to the start and the end of the reads to cover the full reference. Therefore, it will be very slow, if the reference becomes very large.
data.frame
Jochen Kruppa
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