sam2bam_serial: Wrapper function for samtools
In jkruppa/viralDetectTools: Modules for a viral detection pipeline
Description
Usage
Arguments
Details
Author(s)
Description
A serial function to convert sam files from the mapping into bam files.
Usage
1
sam2bam_serial(sam_files, keep = FALSE, index_sort = FALSE)
Arguments
sam_files
A vector of sam_files to be converted
keep
Should the sam files be keeped? [default = FALSE]
index_sort
Should the bam file sbe sorted? [default =
FALSE]
Details
This is not a standalone function. The samtools path is needed in
the program_list().
Author(s)
Jochen Kruppa
jkruppa/viralDetectTools documentation built on May 30, 2019, 3:41 p.m.
R Package Documentation
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Description Usage Arguments Details Author(s)
Description
A serial function to convert sam files from the mapping into bam files.
Usage
1 | sam2bam_serial(sam_files, keep = FALSE, index_sort = FALSE)
|
Arguments
sam_files |
A vector of sam_files to be converted |
keep |
Should the sam files be keeped? [default = FALSE] |
index_sort |
Should the bam file sbe sorted? [default = FALSE] |
Details
This is not a standalone function. The samtools path is needed in the program_list().
Author(s)
Jochen Kruppa
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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