Files in jmonlong/sQTLseekeR
Splicing QTL discovery tool
.gitignore
DESCRIPTION
Data/genes.bed
Data/sQTLs-FDR10-CEU.tsv.gz
Data/sQTLs-FDR10-FIN.tsv.gz
Data/sQTLs-FDR10-GBR.tsv.gz
Data/sQTLs-FDR10-TSI.tsv.gz
Data/sQTLs-FDR10-YRI.tsv.gz
Data/snps-012coded.tsv
Data/transExpression.tsv.gz
NAMESPACE
R/adonis.comp.R
R/classify.events.R
R/compFscore.R
R/compPvalue.R
R/compute.null.R
R/hellingerDist.R
R/index.genotype.R
R/md.trans.R
R/nbDiffPt.R
R/permutest.betadisper.R
R/prepare.trans.exp.R
R/read.bedix.R
R/relativize.R
R/sqtl.seeker.R
R/sqtls.R
R/te.dispersion.R
README.md
TODO.md
docs/README.md
docs/SplicingEventClassification.Rmd
docs/SplicingEventClassification.md
docs/SplicingEventClassification_files/figure-markdown_github/unnamed-chunk-11-1.png
docs/SplicingEventClassification_files/figure-markdown_github/unnamed-chunk-7-1.png
docs/SplicingEventClassification_files/figure-markdown_github/unnamed-chunk-8-1.png
docs/splicingEventsClassification.png
install.R
installOnR.3.1.R
man/adonis.comp.Rd
man/classify.events.Rd
man/compFscore.Rd
man/compPvalue.Rd
man/compute.null.Rd
man/hellingerDist.Rd
man/index.genotype.Rd
man/md.trans.Rd
man/nbDiffPt.Rd
man/permutest.betadisper.Rd
man/prepare.trans.exp.Rd
man/read.bedix.Rd
man/relativize.Rd
man/sQTLseekeR-package.Rd
man/sqtl.seeker.Rd
man/sqtls.Rd
man/te.dispersion.Rd
scripts/.BatchJobs.R
scripts/benchmark-sQTLseekeR.R
scripts/cluster.tmpl
scripts/makeClusterFunctionsAdaptive.R
scripts/run-example-BatchJobs-manySNPs.R
scripts/run-example-BatchJobs.R
scripts/run-example-preproc.sh
scripts/run-example.R
tests/testthat.R
tests/testthat/test-Fcomp.R
tests/testthat/test-PVcomp.R
tests/testthat/test-indexGeno.R
tests/testthat/test-prepareTE.R
tests/testthat/test-sqtlseeker.R
