compPvalue: P-values computation

In jmonlong/sQTLseekeR: Splicing QTL discovery tool

Description

Compute P-values from F scores.

Usage

compPvalue(res.df, tre.dist, min.nb.ext.scores = 1000, nb.perm.max = 1e+06,
  svQTL = FALSE, approx = TRUE)

Arguments

res.df	a data.frame with the F scores and number of groups.
tre.dist	the distance object of the transcript relative expression.
min.nb.ext.scores	the minimum number of permuted score higher than 'F.lead' to allow the computation to stop. Default is 1000.
nb.perm.max	the maximum number of permutations. Default is 1e6.
svQTL	should svQTL test be performed instead of sQTL. Default is FALSE.
approx	should the asymptotic distribution be used instead of permutations. Default is TRUE.

Value

an updated data.frame with new columns 'pv' and 'nb.perms'.

Author(s)

Jean Monlong

jmonlong/sQTLseekeR documentation built on May 19, 2019, 1:54 p.m.