index.genotype: Index the genotype file
In jmonlong/sQTLseekeR: Splicing QTL discovery tool
Description
Usage
Arguments
Value
Author(s)
Description
Index genotype file. The file must be tab-separated and ordered by chr, start, end
position. Moreover, the first four columns must be 'chr', 'start', 'end' and 'snpId'
information. Then each additional column is named using a sample ID and represents
its genotype. The genotype is coded as follow: 0 for ref/ref, 1 for ref/mut, 2 for
mut/mut and -1 for missing values. The input file should be a text file.
Usage
1
Arguments
file
the name of the genotype file
Value
the name of the indexed genotype file.
Author(s)
Jean Monlong
jmonlong/sQTLseekeR documentation built on May 19, 2019, 1:54 p.m.
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Description Usage Arguments Value Author(s)
Description
Index genotype file. The file must be tab-separated and ordered by chr, start, end position. Moreover, the first four columns must be 'chr', 'start', 'end' and 'snpId' information. Then each additional column is named using a sample ID and represents its genotype. The genotype is coded as follow: 0 for ref/ref, 1 for ref/mut, 2 for mut/mut and -1 for missing values. The input file should be a text file.
Usage
1 |
Arguments
file |
the name of the genotype file |
Value
the name of the indexed genotype file.
Author(s)
Jean Monlong
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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