compFscore: F score computation

Description Usage Arguments Value Author(s)

Description

Compute the F score, max diff ratio difference.

Usage

1
compFscore(geno.df, tre.dist, tre.df, svQTL = FALSE)

Arguments

geno.df

a data.frame of one row with the genotype information for each sample.

tre.dist

a distance object from the transcript relative expression.

tre.df

a data.frame with the transcript relative expression.

svQTL

should svQTL test be performed in addition to sQTL. Default is FALSE.

Value

a data.frame with columns:

F

the F score.

nb.groups

the number of groups created by the genotypes.

md

the maximum difference in splicing ratios between genotype groups.

tr.first, tr.second

the two transcripts that change the most.

Author(s)

Jean Monlong


jmonlong/sQTLseekeR documentation built on May 19, 2019, 1:54 p.m.