contrast2comp_dev: Convert contrast to short-form comp, convert comp to contrast...

In jmw86069/jamses: Jam SummarizedExperiment Stats

Convert contrast to short-form comp, convert comp to contrast (DEV)

Description

Convert contrast to short-form comp, convert comp to contrast (DEV)

Usage

contrast2comp_dev(contrast_names, verbose = FALSE, ...)

Details

This method is developmental, intended to provide a vectorized approach to improve speed.

Examples

contrast_names1 <- c("(A_c-B_c)-(A_d-B_d)",
   "A_c-B_c",
   "GroupA-GroupB",
   "((A_c_J-B_c_J)-(A_d_J-B_d_J))-((A_c_W-B_c_W)-(A_d_W-B_d_W))")

contrast2comp_dev(contrast_names1)

# Note: this function fails when contrasts are not balanced
contrast2comp_dev(c("(A_c-B_c)-(A_d-C_d)"), verbose=TRUE)
contrast2comp(c("(A_c-B_c)-(A_d-C_d)"), verbose=TRUE)

contrast2comp_dev(c(contrast_names1[1:2], "(A_c-B_c)-(A_d-C_d)"), verbose=TRUE)

jmw86069/jamses documentation built on May 31, 2024, 1:36 p.m.