jam_igraph_arrows: Render igraph arrows

In jmw86069/multienrichjam: Analysis and Visualization of Multiple Gene Set Enrichments

Render igraph arrows

Description

Render igraph arrows

Usage

jam_igraph_arrows(
  x1,
  y1,
  x2,
  y2,
  code = 2,
  size = 1,
  width = 1,
  open = TRUE,
  sh.adj = 0.1,
  sh.lwd = 1,
  sh.col = if (is.R()) par("fg") else 1,
  sh.lty = 1,
  h.col = sh.col,
  h.col.bo = sh.col,
  h.lwd = sh.lwd,
  h.lty = sh.lty,
  arrows_only = FALSE,
  curved = FALSE,
  verbose = FALSE
)

Arguments

x1, y1, x2, y2	numeric coordinates for initial and final x and y coordinates.
code	integer indicating the position of arrow: code=1 arrow is positioned on the line end code=2 arrow is positioned on the line start code=3 arrow is positioned on both ends of the line
size	numeric scaled size of the arrow head, which is applied to both the length and width of the arrow head.
width	numeric scalar for the arrow head width, which is only applied to the relative arrow width.
open	logical indicating whether the arrow head should be a filled polygon, otherwise only the outer "V" lines are drawn.
sh.adj	numeric adjustment for segment length, where: sh.adj=0 will extend the edge line (underneath the arrow head) to the end of the line sh.adj=1 will extend the edge line only to the base of the arrow head sh.adj=1.1 will leave a gap approximately 10% the arrow head length, between the edge line and the start of the arrow head.
sh.lwd	numeric line width of main segment edge line
sh.col	character color of main segment edge line
sh.lty	numeric line type of main segment edge line
h.col, h.col.bo	character arrow head color and arrow head border color, respectively.
h.lwd	numeric arrow head line width
h.lty	numeric arrow head line type
arrows_only	logical indicating whether to draw only arrows, or arrows_only=FALSE to draw arrows and edge lines.
curved	logical indicating whether to draw curved edges
verbose	logical indicating whether to print verbose output.

Details

This function is a mimic of the internal igraph:::igraph.Arrows() which is not permitted to be called directly for CRAN-approved R packages.

See Also

Other jam igraph internal functions: default_igraph_values(), get_igraph_arrow_mode(), parse_igraph_plot_params()

Examples

plot(NULL, xlim=c(-3, 3), ylim=c(-4, 4), type="n", xlab="", ylab="", bty="n")
jam_igraph_arrows(-2, 3, 2, 3, code=1, open=FALSE, sh.col="blue", sh.lwd=2)
jam_igraph_arrows(-2, 2, 2, 2, code=2, open=FALSE, sh.col="red", sh.lwd=2)
jam_igraph_arrows(-2, 1, 2, 1, code=3, open=FALSE, sh.col="gold", sh.lwd=2)
jam_igraph_arrows(-2, 0, 2, 0, code=3, arrows_only=TRUE, open=FALSE, sh.col="purple4", sh.lwd=2)

jam_igraph_arrows(-2, -1, 2, -1, code=1, open=FALSE, sh.col="blue", h.col="#FF000055", sh.lwd=2, size=2, sh.adj=0.1)
jam_igraph_arrows(-2, -2, 2, -2, code=1, open=FALSE, sh.col="blue", h.col="#FF000055", sh.lwd=2, size=2, sh.adj=1.1)
jam_igraph_arrows(-2, -3, 2, -3, code=2, open=FALSE, sh.col="blue", h.col="#FF000055", sh.lwd=2, size=2, sh.adj=1.1)
jam_igraph_arrows(-2, -4, 2, -4, code=3, open=FALSE, sh.col="blue", h.col="#FF000055", sh.lwd=2, size=2, sh.adj=1.1)
text(x=rep(0, 8), y=seq(from=3, to=-4)+0.2,
   labels=c("code=1",
      "code=2",
      "code=3",
      "code=3, arrows_only=TRUE",
      "code=1, size=2, sh.adj=0.1",
      "code=1, size=2, sh.adj=1.1",
      "code=2, size=2, sh.adj=1.1",
      "code=3, size=2, sh.adj=1.1"))

jmw86069/multienrichjam documentation built on Nov. 3, 2024, 10:29 p.m.