layout_with_qfrf: igraph layout function using qgraph Fruchterman-Reingold

In jmw86069/multienrichjam: Analysis and Visualization of Multiple Gene Set Enrichments

igraph layout function using qgraph Fruchterman-Reingold

Description

igraph layout function using qgraph Fruchterman-Reingold

Usage

layout_with_qfrf(repulse = 3.5, seed = 123, ...)

Arguments

repulse	numeric value typically between 3 and 5, passed to layout_with_qfr(), which in turn is passed to qgraph::qgraph.layout.fruchtermanreingold().
seed	numeric value used to set the R random seed, in order to make layouts consistent.
...	additional arguments are passed to layout_with_qfr().

Details

This function returns a layout function, which can be convenient when calling igraph::plot.igraph(), in order to set layout parameters in the same call.

Value

function used to calculate layout coordinates of an igraph object.

See Also

Other jam igraph functions: cnet2df(), cnet2im(), cnetplotJam(), cnetplot_internalJam(), color_edges_by_nodegroups(), color_edges_by_nodes_deprecated(), color_edges_by_nodes(), color_nodes_by_nodegroups(), communities2nodegroups(), drawEllipse(), edge_bundle_bipartite(), edge_bundle_nodegroups(), enrichMapJam(), fixSetLabels(), flip_edges(), get_bipartite_nodeset(), igraph2pieGraph(), jam_igraph(), jam_plot_igraph(), label_communities(), layout_with_qfr(), mem2emap(), memIM2cnet(), mem_multienrichplot(), nodegroups2communities(), rectifyPiegraph(), relayout_with_qfr(), removeIgraphBlanks(), removeIgraphSinglets(), reorderIgraphNodes(), rotate_igraph_layout(), spread_igraph_labels(), subgraph_jam(), subsetCnetIgraph(), subset_igraph_components(), sync_igraph_communities(), with_qfr()

jmw86069/multienrichjam documentation built on Feb. 7, 2024, 12:58 a.m.